Publications

Articles

(*) stands for Corresponding Author

  • Pascual-García, A.(*) & Bell, T. (2019). Community-level signatures of ecological succession in natural bacterial communities. bioRxiv, doi.org/10.1101/636233

  • Pascual-García, A.(*) & Bell, T. (2019). functionInk: An efficient method to detect functional groups in multidimensional networks reveals the hidden structure of ecological communities. bioRxiv, doi.org/10.1101/656504

  • Pascual-García, A., Arenas, M., & Bastolla, U.(*) (2019). The molecular clock in the evolution of protein structures. Systematic Biology, syz022, doi: 10.1093/sysbio/syz022

  • Enke, T. N., Datta, M. S., Schwartzman, J., Cermak, N., Schmitz, D., Barrere, J., Pascual-García, A. & Cordero, O. X.(*) (2019). Modular Assembly of Polysaccharide-Degrading Marine Microbial Communities. Current Biology. 29(9), 1528-1535. doi.org/10.1016/j.cub.2019.03.047

  • Pascual‐García, A.(*) (2018). A constructive approach to the epistemological problem of emergence in complex systems. PloS one, e201745008. doi: 0.1371/journal.pone.0206489 [pdf]

  • Amigo, I., & Pascual‐García, A.(*) (2017). Conflicts of interest in scientific publishing. EMBO reports, e201745008. doi: 10.0.59.148/embr.201745008 [pdf]

  • Pascual-García, A. and Bastolla U.(*) (2017) Mutualism supports biodiversity when the direct competition is weak Nature Commun., 8, 14326 doi: 10.1038/ncomms14326 [pdf]
    • Featured in the Spanish Public National Radio, (in the news and in an interview.
    • Featured in the Science website Madrid+.
  • Sánchez-Nido, G., Romano, L., Bastolla, U. and Pascual-García, A.(*) (2016) Learning protein folding and evolution with a snake puzzle. PeerJ Computer Science 2:e100 doi: 10.7717/peerj-cs.100 [pdf]
  • Ferrera A., Pascual-García, A. and Bastolla, U.(*) (2016) Effective competition determines the global stability of model ecosystems Theoretical Ecology, doi:10.1007/s12080-016-0322-z [pdf]

  • Pascual-García, A., Tamames, J. and Bastolla, U.(*) (2014). Bacteria dialog with Santa Rosalia: Are aggregations of cosmopolitan bacteria mainly explained by habitat filtering or by ecological interactions? BMC microbiology, 14(1), 1-16. [pdf]

  • Vallés, Y., Artacho, A., Pascual-García, A., Ferrús, M. L., Gosalbes, M. J., Abellán, J. J. and Francino, M. P.(*) (2014). Microbial succession in the gut: directional trends of taxonomic and functional change in a birth cohort of Spanish infants. PLoS Genetics, 10(6), e1004406. [pdf]
  • Nido, G. S., Méndez, R., Pascual-García, A., Abia, D., and Bastolla, U.(*) (2012). Protein disorder in the centrosome correlates with complexity in cell types number. Molecular BioSystems, 8(1), 353-367. [pdf]

  • Pascual-García, A., Abia, D., Méndez, R., Nido, G. S., and Bastolla, U.(*) (2010). Quantifying the evolutionary divergence of protein structures: the role of function change and function conservation. Proteins 78(1), 181-196. [pdf]

  • Bastolla, U., Fortuna, M. A., Pascual-García, A., Ferrera, A., Luque, B. and Bascompte, J.(*) (2009). The architecture of mutualistic networks minimizes competition and increases biodiversity. Nature, 458(7241), 1018-1020. [pdf]
  • Pascual-García, A., Abia, D., Ortiz, A. R., and Bastolla, U.(*) (2009). Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures. PLoS Comput. Biol., 5(3), e1000331. [pdf]

Books and Ph.D. Thesis

  • Pascual-García, A Emergent patterns in protein, microbial and mutualistic systems (2015)

    Ph.D Thesis. Universidad Autónoma de Madrid. Summa Cum Laude. Awarded with the University Outstanding Mention

  • Bioinformática con Ñ. Volume I. Coordinators and editors: Sebastián, A. and Pascual-García, A. (2014) ISBN:978-84-617-1976-

  • Bioinformática con Ñ. Volume II. Coordinators and editors: Sebastián, A. and Pascual-García, A. (2014) ISBN:978-84-617-1976-

Book chapters

  • Pascual-García, A.(*) Modelos simplificados de plegamiento de estructura de proteínas (2014) [pdf]

    in: Bioinformática con Ñ. Coordinators: Sebastián, A. and Pascual-García, A. Independent edition. Free access in Zenodo.

  • Pascual-García, A.(*) Alineamiento de estructura de proteínas (2014) [pdf]

    in: Bioinformática con Ñ. Coordinators: Sebastián, A. and Pascual-García, A. Independent edition. Free access in Zenodo.

  • Pascual-García, A.(*) Evolución de estructura de proteínas (2014) [pdf]

    in: Bioinformática con Ñ. Coordinators: Sebastián, A. and Pascual-García, A. Independent edition. Free access in Zenodo.

  • Pascual-García, A.(*) Explorando el rol de la Competición, el Mutualismo y la Arquitectura en Redes Ecológicas: Qué podemos decir sobre la Biodiversidad? (2011) [pdf]

    in: Evolución y Adaptación: 150 años después del origen de las especies. Coordinators: Hernán Dopazo and Arcadi Navarro. Editor: Spanish Society of Evolutionary Biology

Proceedings and preprints

  • Pascual-García, A. and Bastolla, U. The architecture of mutualistic networks does influence structural stability. (2017) Self-Journals of Science 582

  • Pascual-García, A.(*) A topological approach to the problem of emergence in complex systems. (2016) Under review. arXiv:1610.02448

  • Pascual-García, A., Ferrera A., and Bastolla, U. (*) Does mutualism hinders biodiversity? (2014) (comment to James et al. Nature 2012, 487, 227–230.) arXiv:1409.1683

  • Pascual-García, A.(*) On the Epistemology of Complex Networks Theory (2012), Proceedings of the 1st Iberoamerican Congress on Phylosophy of Life Sciences. ISBN:978-84-370-9040-5